Description
The challenges linked to the modern biomedical and health related research and the emergence of new and complex paradigms in order to understand health related challenges such as the 5P (Predictive, Preventive, Participatory, Personalised, and Populational Medicine) paradigm and the One Health paradigm, require more and more an integrated multi-technological, multi-disciplinary and multi-dimensional approach in order to maximize scientific outputs, efficacy and efficiency. As a consequence, to embrace the complexity of health problems, scientists (and industries) have to define programs and activities that involve different disciplines and technologies, usually not owned by single institutes and research technologies. Advances in microscopes herald a new era of progress in life sciences and medicine, leading to substantial improvements in health and well-being for global citizens. From the visualization of pathogens to imaging of host cellular and pathological processes, microscopes have been critical to our ability to fight disease. The need for microscopists in research, government and commercial establishments is undergoing a revolution driven by an urgent requirement set out by global governments to ease the burden of health and social care in Italy and beyond. From this point of view, the European Research Infrastructure Euro Bioimaging ERIC (EUBI) can be instrumental in building long-term capacity and establishing unique territorial advantages that can help attract finance, industrial interest and mobile resources, for example talented scientists. EUBI-ITA is the Italian component of EUBI, the European Research Infrastructure landmark ESFRI for biological and biomedical (preclinical and clinical) imaging. It includes four Nodes (15 centres): one devoted to biological imaging and three medical imaging Nodes. Altogether, the Nodes provide access to cutting edge multimodal imaging technologies across scales, from molecules to men, to imaging related services (e.g. cellular and animal model preparation, probes/tracers preparation and characterization, advanced image data processing and analysis etc) and expertise. Support is available for advanced applications including quantitative assessment of biomarkers as well as “in vitro” assays for the validation of the imaging experiments. EUBI-ITA is the second most accessed EUBI node in Europe demonstrating the competence and importance of the service provided by it. In addition the members of the node are also frontiers of imaging research and they develop advanced imaging instruments, reagents and methods. The more such a network based approach is developed, the easier it will be to interconnect industry, higher education research institutions and governments in the fundamental processes of knowledge creation, access and use in the long term. In accordance with the intervention strategies of interest, the research area and the respective priority technological trajectories, SEE LIFE is proposed as a national and international reference point, for the strengthening of Biomedical Imaging and Advanced Light Microscopy. The CNR, as the national representative entity hosting five EuroBioimaging centres and lead actor as identified in PNIR documents, has decided to promote this initiative in recognition of its role of support to the whole scientific community working with.
The strengthening of the EUBI-ITA technologies is fundamental and the activities include the acquisition and the installation of appropriate instruments for the specific technologies in each center and the development of novel imaging techniques in collaboration with other sections of the infrastructure. In some cases the technology will be advanced in-house by developing new approaches, probes, laser sources or methodologies. Along with the procurement of the instruments or their construction, we will also invest in the selection of appropriate personnel with required aptitude to develop an expertise in these technologies. These personnel will then be trained in-house (if the potentiation involves upgradation of already existing technology) or in other laboratories/facilities where the technology is already available.
The strengthening of the EUBI-ITA will work on following technologies :
- Advanced Volume EM – array tomography, FIB-SEM imaging, correlative light/electron microscopy
- Immunogold based localization coupled to 3D reconstruction
- Label-free and Raman Microscopy, Correlative confocal-Raman microscopy
- Imaging mass spectrometry (IMS); Single-cell-based, imaged lipidomic analysis
- In vivo functional imaging in moving and head-fixed animals
- High throughput microscopy
- Super-resolution microscopy – STED, STORM, SIM
- Hyperspectral microscopy; high-speed spinning disc confocal microscopy; VR-SFG microscopy TSFG microscopy
- High resolution Neuro-MRI (morphology, functional, connectomics) (preclinical, clinical)
- MRI-guided Therapy under acoustic stimulation (preclinical)
- SPINlab hyperpolarizer for metabolic PET-MRI (preclinical and clinical)
- Multimodal PET/SPECT/CT/NIRF(BLI) imaging (preclinical)
- SPECT/CT/3D Autoradiography (preclinical)
- Production of Radiopharmaceuticals
- High resolution photon counting CT (clinical)
- PET/MRI/EEG technology (clinical)
Objectives and expected results
The following actions will be pursued to empower the CNR-IBB facility:
- acquisition of a DNP polarizer dedicated to hyperpolarized metabolic MRI services for non-invasively studies of biochemical changes in disease processes, with a 20000-fold sensitivity improvement. The facility will offer research services on imaging metabolism from cellular level up to living organisms. The equipment will be able to generate hyperpolarized substrates for animal models, and for clinical applications, with very high clinical translatability.
- acquisition of a multimodal imaging platform for preclinical PET/SPECT/CT/Fluorescence and Bioluminescence Imaging, at high resolution. The simultaneous use of PET/SPECT and CT imaging makes it possible to verify the behavior of specific molecular probes simultaneously in the same animal.
- acquisition of a small animal X-ray platform that will allow the measurement of bone mineral density, bone mineral content, and percentage of lean and fat tissue using dual-energy X-ray absorptiometry and single energy X-ray absorptiometry, with important applications in services focused on bone remodeling.
Setting up a laboratory dedicated to the in vitro validation and characterization of the interaction between the probes and their molecular target. The lab will be equipped with the most innovative instruments available on the market for the study of biomolecular interactions both from an experimental and a theoretical point of view:
- SYNAPT – Mass spectrometer with micro-ESI source and Micro HPLC
- OMNISEC – System for studying the size and aggregation state of complexes at high resolution in SEC columns and with molecules up to 100 Da.
- ENVISION – Multifunction reader for multiple analysis of analytes and molecular interactions
- Cluster for HP computing, based on GPU nodes (Graphic Processing Units) – with at least 6 GPU cards
- OCTET R16 – System to monitor both the kinetic and the thermodynamic of biomolecular interactions.
Infrastructural activities will be carried out to adapt existing laboratories to accommodate the new equipment/activities.
To carry out the activities envisaged by the project, temporary staff will be hired (5 CNR technologists + 4 CNR technicians + 2 CNR administrative personnel units).
Training activities and the financing of a doctoral scholarship are also planned.
Project proponents
- Istituto per l’Endocrinologia e l’Oncologia Sperimentale “Gaetano Salvatore (IEOS-CNR) – Sede di Napoli
- Istituto di Bioimmagini e Fisiologia Molecolare (IBFM-CNR) – Sede di Milano
- Istituto di Biostrutture e Bioimmagini (IBB-CNR) – Sede di Napoli
- Istituto di Fisiologia Clinica (IFC-CNR) – Sede di Pisa
- Istituto di Neuroscienze (IN-CNR) – Sede di Padova
Involved entities
- Università degli Studi di Genova con Unità Operative: Laboratory for Advanced Microscopy Bioimaging Spectroscopy
- Università degli studi di Firenze con Unità Operative: Laboratorio Europeo di Spettroscopie Non Lineari (UNIFI-LENS)
- Università degli studi di Torino con Unità Operative: Department of Molecular Biotechnology and Health Sciences
- Università di Pisa con Unità Operative: Direzione Ricerca